genewise output
Score 136.98 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000638_2.0   42 EVKAFVTQDIPL                          HNLVMKHIPGA 
                     +VKAFV QDIPL                          HNLVMKHIPGA 
                     QVKAFVVQDIPL           Y:Y[tac]       HNLVMKHIPGA 
OMLM01020340.1:50000 cgagtggcgaccTAGTATCCT  Intron 1   CAGCcacgaacacgg 
                     atactttaatct  <2-----[50038:50137]-2> aatttaatcgc 
                     gcactgcgcttt                          tcgggacttgt 


SPP00000638_2.0   66 DPELVLLNHYYEELD                       RIPLSEMTRAE 
                     DPELVLLNHYYEELD                       RI LS+MTR+E 
                     DPELVLLNHYYEELD                       RIALSDMTRSE 
OMLM01020340.1:50172 gcgcgccacttggcgGTAAGTC  Intron 2   CAGcagctgaactg 
                     acattttaaaaaata<0-----[50217:51347]-0>gtctcatcgca 
                     ctgtccgctctaatt                       gtcgtcgcctg 


SPP00000638_2.0   92 INKLLAELGFYKKDHPEDQVPEEFRFSPAKDSPFE               
                     IN+LL +LGFYKK  PED+VPEEFRFSPAKDSPF+               
                     INELLGKLGFYKKAQPEDEVPEEFRFSPAKDSPFK               
OMLM01020340.1:51381 aagccgacgttaagccggggcggtcttcgagacta               
                     taattgatgtaaacacaaatcaatgtcccaagcta               
                     ctggggagtccggtatgcgaaggtccttaaccgta               


//
Making a Y in phase 2 intron
>OMLM01020340.1:subseq(21552,101485).pep
QVKAFVVQDIPLYHNLVMKHIPGADPELVLLNHYYEELDRIALSDMTRSEINELLGKLGF
YKKAQPEDEVPEEFRFSPAKDSPFK
//
>OMLM01020340.1:subseq(21552,101485).[50000:51485].sp
CAGGTCAAAGCCTTTGTGGTCCAGGACATTCCTCTTTACCATAACCTGGTGATGAAACAC
ATTCCTGGGGCTGACCCTGAGCTTGTCCTCCTGAACCATTACTATGAAGAACTTGATCGG
ATTGCCCTGTCTGACATGACCCGCTCTGAGATCAATGAGCTGCTGGGGAAACTGGGTTTC
TACAAGAAGGCTCAACCTGAGGACGAGGTACCAGAGGAGTTTCGCTTCTCTCCTGCAAAA
GACAGCCCGTTTAAA
//
OMLM01020340.1:subseq(21552,101485)	GeneWise	match	50000	51485	136.98	+	.	OMLM01020340.1:subseq(21552,101485)-genewise-prediction-1
OMLM01020340.1:subseq(21552,101485)	GeneWise	cds	50000	50037	0.00	+	0	OMLM01020340.1:subseq(21552,101485)-genewise-prediction-1
OMLM01020340.1:subseq(21552,101485)	GeneWise	intron	50038	50137	0.00	+	.	OMLM01020340.1:subseq(21552,101485)-genewise-prediction-1
OMLM01020340.1:subseq(21552,101485)	GeneWise	cds	50138	50216	0.00	+	1	OMLM01020340.1:subseq(21552,101485)-genewise-prediction-1
OMLM01020340.1:subseq(21552,101485)	GeneWise	intron	50217	51347	0.00	+	.	OMLM01020340.1:subseq(21552,101485)-genewise-prediction-1
OMLM01020340.1:subseq(21552,101485)	GeneWise	cds	51348	51485	0.00	+	0	OMLM01020340.1:subseq(21552,101485)-genewise-prediction-1
//